Sum of clicks for keywords is not matching with the Total clicks in looker studio

Hi, 

We used Google Looker Studio to download the total search queries we have received for our site, as the search console gives only up to 1000 search queries. We added a summary row to the looker studio query table and we could see that we have received around 39K clicks for a month and this number is matching with the clicks data shown on the search console tool as well. So I downloaded the query data from Looker Studio and we got 21K queries, but when I sum the number of clicks it came to only 9K, which is only 25% of the clicks that are shown as the total in the Looker Studio table. Could you please help me out with the possible reason for this? Because earlier when I downloaded the data for a different site the total clicks and the sum of clicks from the download query level file actually matched. Thanks in advance.

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