Is there a way to load a custom polygon and plot points within it?

I have a shape file that’s the Gulf of Mexico. My data also contains boat vessels that are represented as points. Is there a way I can overlay the shape file in Looker Maps Viz while displaying the boat vessels as points on the map?

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Yes, if your map is converted to TopoJSON file and the labels in the file are connected (equal) to your data then you can show it

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